Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs6439139 chr3:128410285 T/C 2.82E-5 405 5.38 13.87 14.63 KM Plot
STAD rs6517974 chr21:21927753 A/G 3.36E-5 406 14.63 13.57 3.53 KM Plot
STAD rs6600322 chr1:40719889 G/A 6.51E-9 393 14.93 12.6 3.13 KM Plot
STAD rs66467231 chr7:148971438 CT/C 4.41E-5 406 14.2 16.38 3.43 KM Plot
STAD rs6656858 chr1:197113573 C/T 1.2E-7 406 4.02 17.05 14.07 KM Plot
STAD rs6657171 chr1:196946084 G/A 1.45E-5 401 14.2 16.52 5.28 KM Plot
STAD rs6657246 chr1:196946131 G/A 1.45E-5 401 14.2 16.52 5.28 KM Plot
STAD rs6659506 chr1:227460190 C/A 0 405 14.27 14.45 1.48 KM Plot
STAD rs6670056 chr1:196982776 T/C 5.36E-6 406 5.28 16.52 14.22 KM Plot
STAD rs6672006 chr1:182748782 T/C 5.15E-5 403 14.22 15.6 4.75 KM Plot
STAD rs6675383 chr1:227332229 T/C 0 405 14.37 14.15 1.48 KM Plot
STAD rs6680497 chr1:197083329 G/A 1.2E-7 406 4.02 17.05 14.07 KM Plot
STAD rs6694672 chr1:196945789 T/G 1.45E-5 401 14.2 16.52 5.28 KM Plot
STAD rs6694853 chr1:196946136 A/G 1.45E-5 401 14.2 16.52 5.28 KM Plot
STAD rs6702340 chr1:196945050 G/T 9.7E-6 398 14.23 16.37 5.28 KM Plot